Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_0543
nitrogen source	Ethanolamine (N)	-3.1
nitrogen source	Ethanolamine (N)	-2.7
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.5
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
carbon source	Valerolactone (C)	-0.4
nitrogen source	nitrate (N)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.4
pH	pH 7	-0.3
nitrogen source	Propiolactam (N)	-0.3
nitrogen source	Ammonium chloride (N)	+0.3
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.3
nitrogen source	Ammonium chloride and TNT (N)	+0.3
phage	P. put PUT 10 MOI 10	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3
nitrogen source	no extra (N); with MOPS	+0.3
pH	Growth at pH8 and (C) D-Glucose	+0.3
no stress control	Growth with no stress	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
stress	MOPS minimal media_Glucose20mM with Lithium chloride 200 mM	+0.4
pH	Valerolactone (C) pH 6.5	+0.4
nitrogen source	Urea (N)	+0.4
phage	P. putida Sci Big MOI 0.1	+0.4
nitrogen source	TNT (N)	+0.5
carbon source	butyrate (C)	+0.5
carbon source	ferulate (C); with MOPS	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.6
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