Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0525
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.3
nitrogen source	NAG (N); with MOPS	-0.3
nitrogen source	nitrogen source nitrite 0.5mM	-0.3
pH	Growth at pH6 and (C) D-Glucose	-0.3
carbon source	Ethyl decanoate and D-Glucose (C)s	-0.3
carbon source	3-Hydroxydecanoic (C)	-0.3
pH	pH 7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
carbon source	D-Glucose (C)	+0.3
carbon source	D-Lysine 10 mM (C)	+0.3
carbon source	ferulate (C); with MOPS	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3
pH	Growth at pH6 and (C) Trisodium citrate	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.3
stress	Growth with Chloride 500 mM	+0.3
stress	Growth with Chloride 500 mM; with MOPS	+0.3
carbon source	p-Coumaric (C)	+0.3
temperature shift	Temperature shift 30_to_21; with MOPS	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
temperature	Growth at 25C; with MOPS	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
nitrogen source	nitrate (N)	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5
pH	Growth at pH8 and (C) D-Glucose	+0.6
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