Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0511
carbon source	D-Glucose (C)	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9
carbon source	Valeric (C)	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6
carbon source	ferulate (C); with MOPS	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-0.6
carbon source	D-Glucose (C); with MOPS	-0.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.5
nitrogen source	nitrogen source nitrate 20mM	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.5
temperature shift	Temperature shift 10_to_30	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4
carbon source	L-Lysine (C)	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
pH	Growth at pH9 and (C) Trisodium citrate	-0.4
carbon source	Succinic Acid (C)	-0.4
pH	pH 5	+0.4
temperature shift	Temperature shift 30_to_25; with MOPS	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5
nitrogen source	NAG (N); with MOPS	+0.6
nitrogen source	nitrate (N)	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.6
pH	Growth at pH8 and (C) D-Glucose	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.8
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