Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0490
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0
pH Growth at pH7 and (C) D-Glucose -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8
pH pH 9 -0.7
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6
stress R2A with Fusaric 480 ug/mL -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6
temperature shift Temperature shift 30_to_25 -0.5
carbon source Valerolactone (C) -0.5
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -0.5
pH D-Glucose (C) pH 7 -0.5
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.5
stress Growth with Chloride 200 mM; with MOPS -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5
nitrogen source Hippuric (N) -0.5
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5
carbon source acetate (C) +0.5
nitrogen source D-2-Aminobutyric (N) +0.5
nitrogen source Urea (N) +0.6
carbon source Valerolactone (C) +0.6
phage P. put PUT 10 MOI 0.1 +0.6
phage P. putida South MOI 0.1 +0.6
carbon source 1,3-Butandiol (C) +0.7
phage P. putida Sci small MOI 0.1 +0.7
phage P. putida PUT 7 MOI 1 +0.8
nitrogen source 2,6-diaminopimelic (N) +1.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3
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PP_0490