Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0487
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.7
carbon source	Ethyl decanoate and D-Glucose (C)s	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.6
carbon source	acetate (C)	-0.5
pH	pH 6	-0.5
carbon source	L-Lysine (C)	-0.5
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.5
carbon source	3-Hydroxydecanoic (C)	-0.5
nitrogen source	nitrate (N)	-0.5
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	-0.5
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.4
carbon source	DL-3-Hydroxyisobutyric (C)	-0.4
pH	pH 8	+0.4
nitrogen source	nitrate (N)	+0.4
carbon source	M9 minimal media_noCarbon with D-Glucose 10 mM; 30C; then outgrowth in LB	+0.4
nitrogen source	Ammonium chloride (N)	+0.5
nitrogen source	Urea (N)	+0.5
phage	P. putida South MOI 10	+0.5
stress	Growth with Chloride 500 mM	+0.5
stress	Growth with Chloride 500 mM; with MOPS	+0.5
phage	P. putida Sci Big MOI 0.1	+0.5
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
phage	P. putida Missley MOI 0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
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