Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_0486
carbon source	DL-3-Hydroxyisobutyric (C)	-1.0
carbon source	DL-3-Hydroxyisobutyric (C)	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
carbon source	2-methyl-1-butanol (C)	-0.3
nitrogen source	nitrogen source nitrite 0.5mM	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3
carbon source	4-Aminobutyric 10 mM (C)	-0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.3
nitrogen source	DL-3-Aminoisobutyric (N)	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	+0.3
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3
phage	P. put PUT 10 MOI 10	+0.3
carbon source	Acetate Carbon Source (20mM)	+0.3
no stress control	Growth with no stress	+0.3
pH	Growth at pH8 and (C) D-Glucose	+0.3
carbon source	Octanoic (C)	+0.3
nitrogen source	Ammonium chloride (N)	+0.3
phage	P. putida Sci Big MOI 0.1	+0.3
phage	P. putida compost MOI 0.1	+0.3
carbon source	L-Phenylalanine 5 mM (C)	+0.4
phage	P. putida compost MOI 0.1	+0.4
phage	P. putida PUT 7 MOI 1	+0.4
phage	P. putida Sci small MOI 0.1	+0.5
nitrogen source	D-2-Aminobutyric (N)	+0.5
phage	P. putida Missley MOI 0.1	+0.6
		remove PP_0486