Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0425
carbon source 4-Hydroxyvalerate (C) (40mM) -3.3
carbon source Trisodium citrate (C) -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.0
carbon source ferulate (C); with MOPS -1.6
phage moi 100 Time6-phageFRS -1.4
carbon source L-Leucine (C) -1.2
carbon source carbon source 4-vinylphenol 0.01 mM -1.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -1.2
no stress control Growth with no stress -1.2
nitrogen source nitrite (N) -1.2
temperature Growth at 30C; with MOPS -1.1
stress R2A with Fusaric 240 ug/mL -1.1
temperature shift Temperature shift 30_to_34; with MOPS -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.1
carbon source propionate (C) -1.1
nitrogen source nitrite (N) -1.1
nitrogen source NAG (N); with MOPS -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.0
carbon source Nonanoic (C) -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.0
pH Growth at pH7 and (C) D-Glucose -1.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -0.9
carbon source 4-Hydroxyvalerate (C) (40mM) -0.9
pH pH 7 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0
stress R2A with Polymyxin B sulfate 0.002 mg/ml +1.0
phage P. put South MOI 10 +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +2.0
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PP_0425