Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0416
carbon source D-Glucose (C); with MOPS -1.3
nitrogen source D-2-Aminobutyric (N) -0.9
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9
pH pH 5 -0.9
carbon source ferulate (C); with MOPS -0.8
carbon source Valeric (C) -0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7
nitrogen source Ammonium chloride (N); with MOPS -0.7
temperature Growth at 10C; with MOPS -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7
nitrogen source D-2-Aminobutyric (N) -0.7
carbon source D-Glucose (C); with MOPS -0.7
carbon source 5-Aminovaleric 10 mM (C) -0.7
temperature shift Temperature shift 30_to_21; with MOPS -0.6
carbon source Delta-Decalactone (C) -0.6
carbon source D-Glucose (C) -0.6
carbon source Vanillin (C) -0.6
temperature shift Temperature shift 30_to_21 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6
stress NaCl stress 250 mM -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6
carbon source 3-Hydroxydecanoic (C) -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.6
phage P. putida Missley MOI 0.1 +0.7
nitrogen source 2,6-diaminopimelic (N) +0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7
phage P. put South MOI 1 +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0
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PP_0416