Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_0326
carbon source Cholinium lysinate (C) -3.7
nitrogen source Carnitine Hydrochloride (N) -3.6
nitrogen source Carnitine Hydrochloride (N) -3.5
nitrogen source Betaine (N) -2.8
nitrogen source Betaine (N) -2.6
micoeukaryotes Acanthamoeba sp., muxed culture-2 -2.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.4
nitrogen source Choline chloride (N) -2.4
nitrogen source Choline chloride (N) -2.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.1
carbon source 3-methyl-1-butanol 0.25 vol% (C) -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.0
carbon source 3-methyl-1-butanol 0.1 vol% (C) -1.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.8
pH Growth at pH6 and (C) D-Glucose -1.8
micoeukaryotes C.elegans, mixed culture-2 -1.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.5
micoeukaryotes C.elegans, mixed culture-1 -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -1.0
carbon source butyrate (C) -1.0
nitrogen source Urea (N) -1.0
pH Growth at pH9 and (C) Trisodium citrate -1.0
nitrogen source NAG (N); with MOPS +1.0
carbon source L-Lysine 10 mM (C) +1.2
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PP_0326