Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0323
nitrogen source	Carnitine Hydrochloride (N)	-4.1
carbon source	Cholinium lysinate (C)	-3.6
nitrogen source	Carnitine Hydrochloride (N)	-3.1
nitrogen source	Betaine (N)	-2.6
nitrogen source	Betaine (N)	-2.4
nitrogen source	Choline chloride (N)	-2.3
nitrogen source	Choline chloride (N)	-2.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.9
micoeukaryotes	C.elegans, mixed culture-1	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7
carbon source	acetate (C)	-0.7
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6
temperature shift	Temperature shift 10_to_34; with MOPS	-0.6
nitrogen source	Propandiamine (N)	-0.6
carbon source	BC Lignin Sorghum 10 vol% (C)	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
carbon source	L-Lysine 10 mM (C)	+1.1
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