Fitness for 1 genes in Pseudomonas putida KT2440

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Top 30 experiments (either direction), sorted by average fitness

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Group Condition PP_0322
carbon source Cholinium lysinate (C) -3.1
nitrogen source Carnitine Hydrochloride (N) -2.7
nitrogen source Betaine (N) -2.7
nitrogen source Carnitine Hydrochloride (N) -2.5
nitrogen source Choline chloride (N) -2.4
nitrogen source Betaine (N) -2.3
nitrogen source Choline chloride (N) -2.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9
pH Growth at pH6 and (C) Trisodium citrate -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7
phage P. putida Sci small MOI 0.1 -0.7
micoeukaryotes C.elegans, mixed culture-1 -0.6
nitrogen source 2,6-diaminopimelic (N) -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5
carbon source 3-Methyl-2-Oxobutanoic Acid (C) -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
carbon source Valeric (C) -0.5
carbon source L-Leucine (C) +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
nitrogen source D-2-Aminobutyric (N) +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5
carbon source carbon source 3-O-methyl-glucose 50 mM +0.6
carbon source L-Lysine (C) +0.6
nitrogen source L-Threonine (N) +0.8
nitrogen source L-Threonine (N) +0.8
carbon source L-Lysine 10 mM (C) +1.0
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PP_0322