Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0297
phage P. putida PUT 7 MOI 1 -0.6
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.5
nitrogen source Carnitine Hydrochloride (N) -0.5
carbon source D-Glucose (C); with MOPS -0.4
temperature Growth at 30C; with MOPS -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4
pH Growth at pH6 and (C) Trisodium citrate -0.4
carbon source Ethyl decanoate and D-Glucose (C)s -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3
nitrogen source Ammonium chloride (N) -0.3
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.3
nitrogen source Carnitine Hydrochloride (N) -0.3
carbon source Levulinic Acid (C) -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3
carbon source D-Glucose (C) +0.3
pH Growth at pH6 and (C) Trisodium citrate +0.3
pH pH 5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3
microaerobic m9 microaerobic M9 +0.3
temperature shift Temperature shift 30_to_25; with MOPS +0.3
carbon source L-Lysine (C) +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3
pH D-Glucose (C) pH 6.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3
nitrogen source L-Leucine (N) +0.3
nitrogen source Urea (N); with MOPS +0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4
temperature shift Temperature shift 30_to_34; with MOPS +0.5
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PP_0297