Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0296
nitrogen source	Carnitine Hydrochloride (N)	-1.7
nitrogen source	Carnitine Hydrochloride (N)	-1.4
nitrogen source	Choline chloride (N)	-0.9
nitrogen source	Choline chloride (N)	-0.8
phage	P. putida Sci Big MOI 0.1	-0.7
phage	P. putida Sci small MOI 0.1	-0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5
temperature	Growth at 25C	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5
carbon source	4-Aminobutyric 10 mM (C)	-0.5
carbon source	Delta-Decalactone (C)	-0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
micoeukaryotes	C.elegans, mixed culture-1	-0.4
micoeukaryotes	C.elegans, mixed culture-2	-0.4
pH	pH 7	-0.4
temperature shift	Temperature shift 30_to_21; with MOPS	-0.4
temperature	Growth at 25C; with MOPS	-0.4
carbon source	L-Leucine (C)	-0.4
carbon source	Vanillin (C)	-0.4
phage	PUT8 MOI 0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
phage	PUT 8 MOI 1	+0.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.4
carbon source	D-Glucose (C)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4
nitrogen source	nitrogen source nitrite 0.5mM	+0.4
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
		remove PP_0296