Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0281
nitrogen source L-Ornithine (N) -0.9
nitrogen source L-Ornithine (N) -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.8
carbon source 3-methyl-1-butanol (C) -0.8
carbon source 1,3-Butandiol (C) -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.7
nitrogen source Hippuric (N) -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7
stress Geraniol 1 vol% -0.7
phage moi 100 Time6-phageFRS -0.6
carbon source 3-methyl-1-butanol (C) -0.6
carbon source L-Leucine (C) -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6
carbon source 1-Pentanol (C) -0.6
lb outgrowth control LB outgrowth control -0.6
nitrogen source Hippuric (N) -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
no phage control Time6-nophage -0.5
carbon source ferulate (C); with MOPS +0.5
carbon source carbon source D-Glucose 55.5 mM +0.5
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.5
temperature shift Temperature shift 10_to_30 +0.5
temperature shift Temperature shift 30_to_25 +0.6
stress Growth with Chloride 500 mM; with MOPS +0.6
temperature shift Temperature shift 10_to_30; with MOPS +0.7
carbon source L-Lysine (C) +0.7
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +0.7
carbon source L-Lysine 10 mM (C) +0.8
nitrogen source Propandiamine (N) +0.8
nitrogen source Propandiamine (N) +0.9
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PP_0281