Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_0254
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-2.4
nitrogen source	Urea (N)	-2.2
nitrogen source	D-2-Aminobutyric (N)	-1.8
nitrogen source	no extra (N); with MOPS	-1.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.5
carbon source	Delta-Decalactone (C)	-1.5
carbon source	ferulate (C); with MOPS	-1.2
nitrogen source	nitrogen source nitrite 1mM	-1.2
pH	Growth at pH9 and (C) Trisodium citrate	-1.2
phage	P. putida South MOI 10	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-1.1
carbon source	D-Glucose (C)	-1.1
nitrogen source	Ammonium chloride (N)	-1.1
nitrogen source	Urea (N)	-1.1
pH	Growth at pH7 and (C) Trisodium citrate	-1.0
carbon source	D-Glucose; D-Xylose; p-Coumaric; benzoic acid (C)	-1.0
temperature shift	Temperature shift 10_to_25; with MOPS	-1.0
temperature shift	Temperature shift 10_to_34; with MOPS	-1.0
stress	R2A with Fusaric 240 ug/mL	-1.0
pH	Growth at pH6 and (C) Trisodium citrate	-1.0
carbon source	Nonanoic (C)	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.0
phage	PUT 8 MOI 1	+1.0
carbon source	Glucose (C) (20mM)	+1.0
carbon source	Tween 20 (C)	+1.0
carbon source	Hexanoic (C)	+1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
carbon source	Acetate Carbon Source (20mM)	+1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+1.1
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