Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0238
nitrogen source	nitrogen source Ammonium chloride 20mM	-1.7
nitrogen source	nitrogen source Ammonium chloride 20mM	-1.0
nitrogen source	nitrogen source nitrate 20mM	-0.8
nitrogen source	nitrate (N)	-0.8
phage	P. putida Missley MOI 0.1	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7
carbon source	1,3-Butandiol (C)	-0.7
temperature shift	Temperature shift 10_to_30	-0.6
pH	pH 5	-0.6
carbon source	acetate (C)	-0.6
carbon source	carbon source D-Glucose 55.5 mM	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	-0.6
nitrogen source	nitrogen source nitrate 5mM	-0.6
no stress control	Growth with no stress	-0.6
pH	Growth at pH9 and (C) D-Glucose	-0.5
pH	Growth at pH7 and (C) Trisodium citrate	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5
temperature shift	Temperature shift 10_to_25; with MOPS	-0.5
nitrogen source	Ammonium chloride and TNT (N)	-0.5
nitrogen source	D-2-Aminobutyric (N)	+0.5
carbon source	Tween 20 (C)	+0.5
carbon source	1,4-Butanediol (C)	+0.5
carbon source	Vanillic Acid (C)	+0.5
carbon source	Ferulic Acid (C)	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6
stress	3-methyl-1-butanol 0.4 vol%	+0.6
carbon source	D-Glucose (C)	+0.6
carbon source	Myristic (C)	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8
		remove PP_0238