Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0228
phage	P. putida PUT 7 MOI 1	-1.1
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.9
nitrogen source	D-2-Aminobutyric (N)	-0.9
nitrogen source	Propiolactam (N)	-0.8
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.6
carbon source	ferulate (C); with MOPS	-0.6
pH	Growth at pH6 and (C) D-Glucose	-0.6
pH	Growth at pH8 and (C) Trisodium citrate	-0.6
carbon source	Valerolactone (C)	-0.6
temperature shift	Temperature shift 10_to_30	-0.5
nitrogen source	Urea (N); with MOPS	-0.5
temperature shift	Temperature shift 30_to_34; with MOPS	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4
carbon source	butyrate (C)	+0.4
carbon source	Nonanoic (C)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
nitrogen source	NAG (N); with MOPS	+0.5
carbon source	Beta-alanine (C)	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5
pH	Growth at pH7 and (C) D-Glucose	+0.5
stress	Growth with Chloride 200 mM; with MOPS	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.5
carbon source	2-Methylbutanoic (C)	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6
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