Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0222
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.6
phage P. putida PUT 7 MOI 1 -0.4
carbon source 1,3-Butandiol (C) -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4
nitrogen source nitrogen source nitrite 1mM -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.3
nitrogen source nitrate (N) +0.3
carbon source Oleic (C) +0.3
nitrogen source NAG (N) +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.4
carbon source butyrate (C) +0.4
no stress control Growth with no stress +0.4
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL +0.4
pH D-Glucose (C) pH 7 +0.4
phage P. putida South MOI 0.1 +0.4
carbon source 3-methyl-3-buten-1-ol 0.25 vol% (C) +0.4
nitrogen source 2,6-diaminopimelic (N) +0.4
toxin pUC18_phdP1_pSU18T_docP1 +0.4
nitrogen source D-2-Aminobutyric (N) +0.4
nitrogen source nitrogen source nitrite 1mM +0.4
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +0.4
pH Growth at pH6 and (C) Trisodium citrate +0.4
stress Growth with Chloride 500 mM; with MOPS +0.4
pH pH 6 +0.4
carbon source 4-Aminobutyric 10 mM (C) +0.4
nitrogen source 2,6-diaminopimelic (N) +0.5
carbon source ferulate (C); with MOPS +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.6
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PP_0222