Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0205
phage	P. putida Sci small MOI 0.1	-0.6
phage	P. putida Sci Big MOI 0.1	-0.5
phage	P. putida Missley MOI 0.1	-0.4
carbon source	ferulate (C); with MOPS	-0.4
phage	P. putida PUT 7 MOI 1	-0.4
nitrogen source	Ammonium chloride (N)	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.3
carbon source	Delta-Undecalactone (C)	-0.3
temperature shift	Temperature shift 10_to_25; with MOPS	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2
pH	Growth at pH6 and (C) D-Glucose	-0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.2
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.2
carbon source	Valerolactone (C)	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2
carbon source	D-Glucose (C); with MOPS	+0.3
carbon source	Heptanoic (C)	+0.3
micoeukaryotes	C.elegans, mixed culture-2	+0.3
carbon source	Myristic (C)	+0.3
pH	pH 8	+0.3
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.3
time series	Timeseries; MIN condition; Bioreplicate 1; Time 7hrs; Measurement	+0.3
nitrogen source	Propiolactam (N)	+0.3
pH	Valerolactone (C) pH 6.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
pH	Growth at pH6 and (C) D-Glucose	+0.4
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