Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_0196
carbon source	L-Leucine (C)	-1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
nitrogen source	D-2-Aminobutyric (N)	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7
temperature shift	Temperature shift 10_to_30; with MOPS	-0.6
temperature	Growth at 30C; with MOPS	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.5
pH	D-Glucose (C) pH 6	-0.5
temperature shift	Temperature shift 30_to_25	-0.5
carbon source	D-Glucose (C) with 20AA_mix_minus_Tyr	-0.5
carbon source	Mucic (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.5
carbon source	Delta-Undecalactone (C)	-0.5
stress	Growth with Chloride 500 mM	+0.5
carbon source	Lignin Monomers (C)	+0.5
pH	Valerolactone (C) pH 6.5	+0.5
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.5
nitrogen source	nitrate (N)	+0.5
supernatant	Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x and Ferric chloride 1 uM	+0.5
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.6
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.6
carbon source	4-Hydroxyvalerate (C) (40mM)	+0.6
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+0.6
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.6
micoeukaryotes	C.elegans, mixed culture-2	+0.7
micoeukaryotes	C.elegans, mixed culture-1	+0.7
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