Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0183
pH	Growth at pH7 and (C) D-Glucose	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.9
carbon source	Trisodium citrate (C)	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.5
nitrogen source	NAG (N)	-0.5
pH	Growth at pH7 and (C) Trisodium citrate	-0.5
nitrogen source	nitrate (N)	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4
phage	P. putida Sci Big MOI 0.1	-0.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4
carbon source	DL-3-Hydroxyisobutyric (C)	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4
stress	pinene 10 vol%	+0.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4
dilutelb	LB 0.1x with 55.5 mM D-Glucose	+0.4
carbon source	L-Lysine 10 mM (C)	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.4
carbon source	4-Methyl-2-oxopentanoic (C)	+0.4
pH	Growth at pH9 and (C) Trisodium citrate	+0.4
carbon source	Valerolactone (C)	+0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.5
temperature shift	Temperature shift 30_to_21; with MOPS	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
nitrogen source	2,6-diaminopimelic (N)	+0.7
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