Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0162
carbon source	ferulate (C); with MOPS	-0.7
stress	Geraniol 1 vol%	-0.5
carbon source	D-Glucose (C)	-0.5
phage	PUT8 MOI 10	-0.5
carbon source	Valeric (C)	-0.5
microaerobic m9	microaerobic M9	-0.4
nophagecontrol	No phage control	+0.4
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4
pH	Growth at pH6 and (C) D-Glucose	+0.4
carbon source	Vanillin (C)	+0.4
nitrogen source	Urea (N); with MOPS	+0.4
carbon source	Myristic (C)	+0.4
temperature shift	Temperature shift 10_to_25	+0.4
carbon source	Glucose (C) (20mM)	+0.4
phage	P. putida Sci small MOI 0.1	+0.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4
pH	Growth at pH6 and (C) D-Glucose	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.4
pH	D-Glucose (C) pH 6	+0.4
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.5
nitrogen source	Caprolactam (N)	+0.5
carbon source	gluconate (C)	+0.5
carbon source	Valerolactone (C)	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.5
nitrogen source	2,6-diaminopimelic (N)	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
phage	P. putida PUT 7 MOI 1	+1.0
phage	P. putida Missley MOI 0.1	+1.0
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