Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0094
nitrogen source nitrogen source nitrite 0.5mM -1.0
carbon source 5-Aminovaleric 10 mM (C) -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8
reactor_pregrowth Adaptation in M9 media timecourse 4; day 2 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7
carbon source Crotonic (C) -0.7
temperature shift Temperature shift 10_to_30 -0.7
carbon source L-Lysine 10 mM (C) -0.7
stress Butyrolactam 2 vol% -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7
pH Growth at pH8 and (C) D-Glucose -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7
carbon source Levulinic Acid (C) -0.7
nitrogen source Ammonium chloride (N) -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.6
carbon source carbon source Bisabolene 48.9 mM +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7
carbon source carbon source 4-vinylphenol 0.1 mM +0.7
pH pH 6 +0.8
carbon source carbon source 4-vinylphenol 0.01 mM +0.8
carbon source carbon source 3-O-methyl-glucose 10 mM +0.8
nitrogen source D-2-Aminobutyric (N) +0.9
carbon source carbon source Bisabolol 45 mM +1.1
pH pH 4 +1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1
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PP_0094