Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0093
phage	P. put South MOI 10	-0.4
nitrogen source	NAG (N)	-0.3
carbon source	Vanillin (C)	-0.3
pH	Growth at pH9 and (C) Trisodium citrate	-0.3
carbon source	Valeric (C)	-0.3
nitrogen source	nitrate (N)	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.3
carbon source	Lignin Monomers (C)	-0.3
carbon source	benzoic (C)	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
carbon source	Delta-Decalactone (C)	-0.3
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.3
temperature	Growth at 30C; with MOPS	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
carbon source	D-Glucose (C)	-0.2
carbon source	Acetate Carbon Source (5mM)	-0.2
pH	D-Glucose (C) pH 7	-0.2
carbon source	Acetate Carbon Source (20mM)	-0.2
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.2
pH	pH 8	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.3
pH	pH 9	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3
pH	pH 5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
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