Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0092
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-2.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-2.5
pH	Growth at pH7 and (C) D-Glucose	-1.8
carbon source	butyrate (C)	-1.7
carbon source	L-Leucine (C)	-1.5
nitrogen source	nitrogen source nitrite 1mM	-1.5
pH	Growth at pH7 and (C) Trisodium citrate	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.3
stress	Growth with Chloride 500 mM; with MOPS	-1.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-1.1
micoeukaryotes	Acanthamoeba sp., muxed culture-1	-0.9
nitrogen source	NAG (N); with MOPS	-0.9
nitrogen source	nitrogen source nitrate 20mM	-0.9
carbon source	D-Glucose (C)	-0.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.9
nitrogen source	nitrogen source nitrate 5mM	-0.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.9
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.9
phage	P. putida Sci small MOI 0.1	-0.8
nitrogen source	Hydantoin (N)	-0.8
temperature	Growth at 30C; with MOPS	-0.8
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.8
temperature shift	Temperature shift 30_to_25	-0.8
nitrogen source	NAG (N); with MOPS	+0.8
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	+0.9
carbon source	ferulate (C); with MOPS	+0.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.7
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