Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0072
nitrogen source	2,6-diaminopimelic (N)	-0.7
phage	P. putida Sci small MOI 0.1	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.5
carbon source	Tween 20 (C)	-0.4
nitrogen source	nitrogen source nitrate 5mM	-0.4
no stress control	Growth with no stress	-0.4
pH	Growth at pH7 and (C) D-Glucose	-0.4
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3
pH	Growth at pH6 and (C) D-Glucose	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.3
temperature shift	Temperature shift 10_to_25	-0.3
supernatant	Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x and Ferric chloride 1 uM	-0.3
nitrogen source	Urea (N)	-0.3
phage	P. putida Missley MOI 0.1	-0.2
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	-0.2
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2
nitrogen source	nitrogen source nitrite 1mM	-0.2
temperature shift	Temperature shift 10_to_30; with MOPS	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.2
carbon source	Glucose (C) (40mM)	-0.2
carbon source	D-Galacturonic Acid (C)	-0.2
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.2
pH	Growth at pH6 and (C) Trisodium citrate	+0.2
carbon source	Myristic (C)	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3
pH	pH 6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5
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