Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_0051
carbon source L-Alanine (C) -0.7
carbon source L-Leucine (C) -0.6
carbon source 4-Hydroxyvalerate (C) (40mM) -0.6
carbon source Valeric (C) -0.5
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.5
temperature shift Temperature shift 30_to_25 -0.5
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4
carbon source Acetate Carbon Source (5mM) -0.4
carbon source Acetate Carbon Source (5mM) -0.4
carbon source Quinic Acid (C) -0.4
pH pH 6 +0.4
carbon source carbon source 3-O-methyl-glucose 10 mM +0.4
carbon source ferulate (C); with MOPS +0.4
stress R2A with Fusaric 120 ug/mL +0.4
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.4
pH pH 7 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5
nitrogen source nitrogen source nitrite 1mM +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5
pH pH 9 +0.5
pH pH 5 +0.6
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.6
carbon source carbon source Bisabolene 48.9 mM +0.6
carbon source ferulate (C); with MOPS +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6
pH pH 8 +0.8
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PP_0051