Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_0030
nitrogen source	Ammonium chloride (N)	-0.5
pH	Growth at pH7 and (C) Trisodium citrate	-0.4
carbon source	Tween 20 (C)	-0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.4
nitrogen source	NAG (N); with MOPS	-0.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.3
temperature shift	Temperature shift 10_to_30; with MOPS	-0.3
phage	PUT8 MOI 0.1	-0.3
nitrogen source	Ammonium chloride (N)	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3
supernatant	Supernatant; Brevundimonas sp. 374 spent media 0.5x	-0.3
phage	P. putida Sci Big MOI 0.1	-0.3
temperature shift	Temperature shift 30_to_10; with MOPS	-0.3
phage	P. putida PUT10 MOI 10	-0.3
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.3
phage	P. putida PUT10 MOI 1	-0.3
no stress control	Growth with no stress	-0.3
carbon source	ferulate (C); with MOPS	-0.3
carbon source	carbon source Bisabolene 48.9 mM	-0.3
carbon source	L-Phenylalanine 5 mM (C)	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3
carbon source	ferulate (C); with MOPS	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.3
temperature shift	Temperature shift 30_to_25; with MOPS	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3
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