Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_25915
soil	soil sample 5; outgrowth in LB	-2.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.2
phage	P. simiae Grant Run MOI 10	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.1
phage	P. simiae Grant Run MOI 0.1	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.1
phage	P. simiae Grant Run MOI 10	-1.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0
nophagecontrol	Only library	-1.0
phage	Wcs_0.1	-0.9
liquid stress	Scopoletin 2 mM; liquid stress	-0.9
motility	inner cut, LB soft agar motility assay	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.8
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.9
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+1.0
agar plate interaction control	Taped volatile agar plate with no fungus	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+1.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+1.0
agar plate interaction control	Taped volatile agar plate with no fungus	+1.5
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