Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_22945
soil	soil sample 2; outgrowth in LB	-2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4
carbon source	2-Deoxy-D-Ribose (C)	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0
carbon source	L-Alanine (C)	-1.0
stress	Spectinomycin 0.4 mg/ml	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9
stress	2-Furfuraldehyde 0.06 vol%	-0.9
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.9
motility	inner cut, LB soft agar motility assay	-0.9
carbon source	Uridine (C)	-0.9
solid stress	80% Methanol 3 mM; solid stress	+0.9
liquid stress	Scopoletin 2 mM; liquid stress	+0.9
stress	Thallium(I) acetate 0.0625 mg/ml	+0.9
solid stress	Scopoletin 1 mM; solid stress	+0.9
root	root sample 6; outgrowth in LB	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9
phage	P. simiae ORA MOI 0.1	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
solid stress	80% Methanol 1 mM; solid stress	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.1
phage	P. simiae OR Antrim MOI 0.1	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.9
		remove PS417_22945