Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_17175
root	root sample 6; outgrowth in LB	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9
seeds	Growth on radish seeds for 72 hours	-0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7
phage	P. simiae OR Antrim MOI 0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.5
carbon source	Carbon source L-Citrulline 5 mM	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5
soil	soil sample 8; outgrowth in LB	-0.5
phage	P. simiae Grant Run MOI 10	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5
carbon source	Carbon source D-Mannitol 5 mM	-0.5
soil	soil sample 5; outgrowth in LB	-0.5
seeds	Growth on radish seeds for 72 hours	-0.5
carbon source	Carbon source D-Mannitol 5 mM	-0.5
carbon source	Carbon source L-Ornithine 10 mM	-0.4
phage	P. simiae Grant Run MOI 0.1	-0.4
supernatant control	Vogels_fungal_media; pH 5.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4
stress	Neomycin 0.04 mg/ml	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6
stress	L-Lysine 60 mM	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6
phage	JP1 MOI 0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8
		remove PS417_17175