Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_15020
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.6
soil	soil sample 2; outgrowth in LB	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5
phage	JP1 MOI 1	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5
phage	P. simiae ORA MOI 0.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.5
phage	P. simiae OR Antrim MOI 0.1	-0.5
supernatant control	Vogels_fungal_media 0.1X	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5
phage	P. simiae Grant Run MOI 0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.4
carbon source	D-Trehalose (C)	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4
seeds	Growth on radish seeds for 72 hours	+0.4
seeds	Growth on radish seeds for 24 hours	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4
nitrogen source	Ammonium chloride (N)	+0.4
phage	P. simiae Grant Run MOI 10	+0.5
soil	soil sample 3; outgrowth in LB	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
motility	inner cut, LB soft agar motility assay	+0.6
nophagecontrol	Only library	+0.6
		remove PS417_15020