Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14710
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.1
carbon source	2'-Deoxyinosine 5 mM (C)	-2.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.2
carbon source	2'-Deoxyinosine 5 mM (C)	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.0
phage	P. simiae Grant Run MOI 0.1	-1.0
nophagecontrol	Only library	-1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.0
root	root sample 6; outgrowth in LB	-0.9
motility	inner cut, LB soft agar motility assay	-0.9
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.9
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.9
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8
motility	outer cut, LB soft agar motility assay	-0.8
seeds	Growth on radish seeds for 72 hours	+0.9
stress	Chloramphenicol 0.015 mg/ml	+0.9
liquid stress	Scopoletin 1 mM; liquid stress	+0.9
carbon source	L-Valine (C)	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9
stress	methylglyoxal 0.032 vol%	+1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
phage	P. simiae Grant Run MOI 0.1	+1.1
phage	P. simiae ORA MOI 1	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+2.6
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