Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_14545
no phage control	Time6-nophage	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4
nitrogen source	Adenine (N)	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.3
liquid stress	Fraxetin 3 mM; liquid stress	+0.3
liquid stress	Fraxetin 2 mM; liquid stress	+0.3
solid stress	Scopoletin 0.5 mM; solid stress	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3
solid stress	80% Methanol 3 mM; solid stress	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3
phage	P. simiae Grant Run MOI 10	+0.3
phage	P. simiae OR Antrim MOI 1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4
seeds	Growth on radish seeds for 72 hours	+0.4
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4
liquid stress	Scopoletin 2 mM; liquid stress	+0.4
seeds	Growth on radish seeds for 72 hours	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5
carbon source	L-Valine (C)	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
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