Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13055
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.7
carbon source	2'-Deoxyinosine 5 mM (C)	-1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5
no phage control	Time6-nophage	-1.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.4
carbon source	L-Leucine (C)	-1.4
motility	inner cut, LB soft agar motility assay	-1.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.1
phage	P. simiae OR Antrim MOI 10	-1.1
seeds	Growth on radish seeds for 72 hours	-1.1
soil	soil sample 3; outgrowth in LB	-1.1
soil	soil sample 8; outgrowth in LB	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1
phage	Wcs_1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-1.0
stress	Gentamicin 0.008 mg/ml	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0
liquid stress	80% Methanol 3 mM; liquid stress	-0.9
phage	JP1 MOI 10	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9
phage	P. simiae ORA MOI 0.1	-0.9
stress	L-Lysine 60 mM	-0.9
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9
carbon source	Carbon source D-Mannitol 2.5 mM	+1.0
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