Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12570
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.4
soil	soil sample 7; outgrowth in LB	-1.3
phage	P. simiae OR Antrim MOI 10	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1
nitrogen source	Adenosine (N)	-1.1
nitrogen source	Urea (N)	-1.1
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2	-0.7
motility	inner cut, LB soft agar motility assay	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7
carbon source	Carbon source L-Ornithine 5 mM	-0.7
phage	P. simiae ORA MOI 10	-0.6
no phage control	Time6-nophage	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.6
phage	P. simiae ORA MOI 1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6
phage	P. simiae ORA MOI 0.1	-0.6
carbon source	D-Galacturonic Acid (C)	-0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
phage	JP1 MOI 10	+0.7
carbon source	D-Glucose (C)	+0.7
phage moi 100	Time6-phageFRS	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+4.0
		remove PS417_12570