Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11115
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8
seeds	Growth on radish seeds for 72 hours	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6
soil	soil sample 5; outgrowth in LB	-0.6
liquid stress	Scopoletin 3 mM; liquid stress	-0.6
motility	inner cut, LB soft agar motility assay	-0.5
carbon source	NAG (C)	-0.5
phage	P. simiae OR Antrim MOI 0.1	-0.5
stress	methylglyoxal 0.032 vol%	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.4
carbon source	Carbon source D-Mannitol 10 mM	+0.4
carbon source	RCH2_defined_glucose with MS_media 1x	+0.4
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6
phage	P. simiae ORA MOI 0.1	+0.6
carbon source	L-Valine (C)	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
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