Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11000
carbon source	L-Arabinose (C)	-5.1
carbon source	L-Arabinose (C)	-4.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.8
seeds	Growth on radish seeds for 72 hours	-1.4
seeds	Growth on radish seeds for 72 hours	-1.4
soil	soil sample 4; outgrowth in LB	-1.3
root	root sample 6; outgrowth in LB	-1.2
phage	JP1 MOI 1	-1.2
soil	soil sample 3; outgrowth in LB	-1.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9
seeds	Growth on radish seeds for 72 hours	-0.8
seeds	Growth on radish seeds for 24 hours	-0.8
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7
phage	P. simiae OR Antrim MOI 1	-0.7
motility	inner cut, LB soft agar motility assay	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7
solid stress	80% Methanol 3 mM; solid stress	+0.7
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7
phage	P. simiae ORA MOI 1	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7
		remove PS417_11000