Fitness for 1 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_06730
rhizosphere	rhizosphere sample 8; outgrowth in LB	-3.1
stress	Phosphomycin 0.001 mg/ml	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7
motility	inner cut, LB soft agar motility assay	-1.5
solid stress	Scopoletin 2 mM; solid stress	-1.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.4
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	-1.4
stress	Phosphomycin 0.002 mg/ml	-1.4
soil	soil sample 2; outgrowth in LB	-1.3
phage	P. simiae Grant Run MOI 10	-1.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Methionine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.3
solid stress	80% Methanol 3 mM; solid stress	-1.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3
liquid stress	80% Methanol 2 mM; liquid stress	-1.3
liquid stress	Fraxetin 3 mM; liquid stress	-1.2
carbon source	Carbon source D-Mannitol 2.5 mM	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+1.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.3
carbon source	2-Deoxy-D-Ribose (C)	+1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+1.4
agar plate interaction control	Taped volatile agar plate with no fungus	+1.6
phage	P. simiae Grant Run MOI 0.1	+1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+1.9
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