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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS06565 and RPSI07_RS06570 are separated by 180 nucleotides
RPSI07_RS06570 and RPSI07_RS24635 are separated by 202 nucleotides
RPSI07_RS24635 and RPSI07_RS24640 overlap by 51 nucleotides
RPSI07_RS24640 and RPSI07_RS06575 are separated by 409 nucleotides
RPSI07_RS06565: RPSI07_RS06565 - class I SAM-dependent methyltransferase, at 1,765,081 to 1,765,713
_RS06565
RPSI07_RS06570: RPSI07_RS06570 - DUF2939 domain-containing protein, at 1,765,894 to 1,766,493
_RS06570
RPSI07_RS24635: RPSI07_RS24635 - hypothetical protein, at 1,766,696 to 1,767,103
_RS24635
RPSI07_RS24640: RPSI07_RS24640 - hypothetical protein, at 1,767,053 to 1,767,445
_RS24640
RPSI07_RS06575: RPSI07_RS06575 - dihydrofolate reductase, at 1,767,855 to 1,768,517
_RS06575
Group
Condition
RPSI07
_RS06565
RPSI07
_RS06570
RPSI07
_RS24635
RPSI07
_RS24640
RPSI07
_RS06575
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.2
-0.0
-0.6
-0.4
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.1
+0.2
-0.6
-0.3
-0.1
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.3
-0.3
-0.2
-0.4
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.1
+0.0
-0.5
-0.3
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.2
-0.1
-0.3
-0.3
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.1
+0.0
-0.4
-0.3
-0.1
cpg
CPG
-0.1
-0.1
-0.3
-0.2
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.0
-0.6
-0.2
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.1
-0.3
-0.4
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.0
+0.2
-0.3
-0.4
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.1
+0.4
-0.6
-0.4
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.0
+0.1
-0.4
-0.4
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.0
+0.2
-0.3
-0.3
+0.1
stress
SMSA with Ralstonia_antibiotic_mix
-0.1
+0.2
-0.1
-0.2
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.0
+0.1
+0.5
-0.1
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
+0.1
-0.2
+0.4
-0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.1
+0.3
-0.3
-0.0
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
+0.2
-0.0
-0.2
+0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.0
-0.3
-0.0
+0.3
+0.4
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.0
-0.2
+0.3
+0.2
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.1
+0.1
+0.5
-0.1
-0.0
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.0
-0.1
+0.3
+0.1
+0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.2
-0.1
+0.2
+0.2
+0.4
m63_quarter_strength
M63_quarter_strength
-0.1
-0.1
+0.2
+0.3
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.1
+0.3
+0.1
+0.4
-0.2
cpg no stress control
CPG no stress control
+0.0
+0.1
+0.5
+0.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.0
+0.3
+0.3
+0.2
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.2
+0.2
+0.4
+0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.1
+0.2
+0.4
+0.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix
+0.2
+0.2
+0.3
+0.6
+0.1
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