Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS23840 and RPSI07_RS23845 are separated by 298 nucleotidesRPSI07_RS23845 and RPSI07_RS23850 overlap by 4 nucleotidesRPSI07_RS23850 and RPSI07_RS23855 are separated by 66 nucleotidesRPSI07_RS23855 and RPSI07_RS23860 are separated by 73 nucleotides RPSI07_RS23840: RPSI07_RS23840 - carbon starvation protein A, at 3,489,162 to 3,491,222 _RS23840 RPSI07_RS23845: RPSI07_RS23845 - sensor histidine kinase, at 3,491,521 to 3,492,966 _RS23845 RPSI07_RS23850: RPSI07_RS23850 - DNA-binding response regulator, at 3,492,963 to 3,493,595 _RS23850 RPSI07_RS23855: RPSI07_RS23855 - hydroxypyruvate isomerase, at 3,493,662 to 3,494,450 _RS23855 RPSI07_RS23860: RPSI07_RS23860 - DUF3617 domain-containing protein, at 3,494,524 to 3,494,988 _RS23860
Group Condition RPSI07_RS23840 RPSI07_RS23845 RPSI07_RS23850 RPSI07_RS23855 RPSI07_RS23860
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.7 -1.0 -1.6 -0.2 -0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.6 -1.1 -1.2 -0.6 +0.1
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.3 -0.4 -0.6 -0.3 -1.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.1 -0.6 -0.6 -0.2 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.9 -0.9 -0.6 -0.1 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.7 -0.9 -1.2 +0.1 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.8 -0.5 -0.7 -0.0 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.7 -0.3 -0.5 +0.3 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.7 -0.9 -0.5 +0.0 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.8 -0.5 -0.9 +0.1 +0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.6 -0.1 -0.8 -0.0 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.6 -0.1 -0.6 +0.2 +0.1
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.8 -0.1 -0.6 +0.3 +0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.1 -0.1 -0.3 +0.1 -0.9
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.6 -0.3 +0.0 -0.5 +0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -0.4 -0.3 -0.4 +0.1 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.6 -0.1 -0.4 +0.1 +0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.4 -0.5 -0.0 +0.1 +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin +0.0 +0.5 -0.0 +0.2 -0.9
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.5 -0.2 -0.2 -0.2 +1.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet +0.2 +0.2 -0.1 +0.3 -0.7
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap +0.1 -0.2 -0.5 +0.1 +0.8
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days +0.0 +0.1 -0.5 +0.2 +1.0
cpg CPG -0.1 +0.1 +0.0 -0.2 +1.3
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +0.1 +0.1 +0.1 -0.1 +1.1
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.0 +0.3 -0.1 +0.2 +0.9
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.1 +0.0 -0.1 +0.1 +1.4
m63_quarter_strength M63_quarter_strength +0.3 +0.3 -0.1 -0.1 +1.1
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.0 +0.2 -0.2 -0.0 +1.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.2 +0.1 +0.2 +0.0 +1.2
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RPSI07_RS23840
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RPSI07_RS23845
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