Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS23560 and RPSI07_RS23565 are separated by 36 nucleotidesRPSI07_RS23565 and RPSI07_RS23570 overlap by 4 nucleotidesRPSI07_RS23570 and RPSI07_RS23575 are separated by 13 nucleotidesRPSI07_RS23575 and RPSI07_RS23580 are separated by 94 nucleotides RPSI07_RS23560: RPSI07_RS23560 - two-component system response regulator, at 3,426,992 to 3,427,711 _RS23560 RPSI07_RS23565: RPSI07_RS23565 - PAS domain-containing sensor histidine kinase, at 3,427,748 to 3,430,183 _RS23565 RPSI07_RS23570: RPSI07_RS23570 - DUF4390 domain-containing protein, at 3,430,180 to 3,430,980 _RS23570 RPSI07_RS23575: RPSI07_RS23575 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 3,430,994 to 3,432,319 _RS23575 RPSI07_RS23580: RPSI07_RS23580 - zinc metalloprotease HtpX, at 3,432,414 to 3,433,274 _RS23580
Group Condition RPSI07_RS23560 RPSI07_RS23565 RPSI07_RS23570 RPSI07_RS23575 RPSI07_RS23580
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -2.8 N.D. -0.2 -0.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -1.8 N.D. +0.5 -2.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -2.1 N.D. -1.0 -0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -2.5 N.D. -0.4 +0.1
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. -1.6 N.D. -0.5 -0.4
m63_quarter_strength M63_quarter_strength N.D. -2.0 N.D. -0.1 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -2.6 N.D. +0.3 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet N.D. -1.8 N.D. -0.2 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -1.6 N.D. +0.2 -0.8
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap N.D. -1.9 N.D. +0.0 -0.3
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap N.D. -1.5 N.D. -0.2 -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -2.3 N.D. +0.3 -0.2
cpg CPG N.D. -1.8 N.D. -0.3 +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -0.5 N.D. +0.5 -1.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet N.D. -2.3 N.D. -0.1 +1.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -1.9 N.D. +0.8 +0.1
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -1.1 N.D. +0.6 -0.4
cpg no stress control CPG no stress control N.D. -2.3 N.D. +0.6 +1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -1.6 N.D. +0.6 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin N.D. -1.6 N.D. +0.2 +0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol N.D. -1.8 N.D. +0.4 +0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride N.D. -1.5 N.D. -0.3 +1.2
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days N.D. -1.2 N.D. +0.5 +0.4
stress SMSA with Ralstonia_antibiotic_mix N.D. -1.6 N.D. +0.3 +1.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin N.D. +1.2 N.D. -0.1 -1.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet N.D. -1.3 N.D. +0.4 +1.0
smsa no antibiotic control SMSA no antibiotic control N.D. -1.1 N.D. +0.4 +1.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol N.D. +1.8 N.D. +0.1 -0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin N.D. -0.4 N.D. +0.5 +1.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. +3.3 N.D. +0.1 -1.1
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RPSI07_RS23560
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