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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS23070 and RPSI07_RS23075 are separated by 264 nucleotides
RPSI07_RS23075 and RPSI07_RS23080 are separated by 32 nucleotides
RPSI07_RS23080 and RPSI07_RS23085 are separated by 89 nucleotides
RPSI07_RS23085 and RPSI07_RS23090 are separated by 33 nucleotides
RPSI07_RS23070: RPSI07_RS23070 - DUF4430 domain-containing protein, at 3,321,794 to 3,322,237
_RS23070
RPSI07_RS23075: RPSI07_RS23075 - hypothetical protein, at 3,322,502 to 3,323,602
_RS23075
RPSI07_RS23080: RPSI07_RS23080 - metal-sulfur cluster assembly factor, at 3,323,635 to 3,323,985
_RS23080
RPSI07_RS23085: RPSI07_RS23085 - nitric-oxide reductase large subunit, at 3,324,075 to 3,326,351
_RS23085
RPSI07_RS23090: RPSI07_RS23090 - DUF2249 domain-containing protein, at 3,326,385 to 3,326,669
_RS23090
Group
Condition
RPSI07
_RS23070
RPSI07
_RS23075
RPSI07
_RS23080
RPSI07
_RS23085
RPSI07
_RS23090
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.3
-0.1
-0.5
-0.3
-0.5
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
-0.1
-0.5
+0.2
-0.1
-0.5
m63_quarter_strength
M63_quarter_strength
-0.1
-0.2
-0.3
-0.1
-0.4
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.1
+0.2
-0.6
+0.0
-0.6
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.3
-0.4
+0.4
-0.1
-0.6
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.1
+0.1
-0.4
-0.1
-0.6
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.1
-0.2
+0.1
-0.3
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
-0.2
-0.1
-0.2
-0.5
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.1
-0.1
-0.3
+0.1
-0.4
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.2
+0.1
-0.1
-0.0
-0.4
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.0
+0.2
-0.4
-0.1
-0.4
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.2
+0.0
-0.4
+0.1
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.1
+0.1
-0.1
+0.1
-0.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
-0.3
+0.3
-0.1
+0.0
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.2
+0.2
+0.2
-0.3
-0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.0
-0.2
+0.3
-0.2
-0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.3
+0.1
-0.2
-0.1
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.1
-0.1
-0.1
+0.3
-0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.5
+0.0
-0.3
-0.1
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
+0.3
+0.1
+0.1
-0.2
m63_quarter_strength
M63_quarter_strength
-0.1
-0.3
+0.1
+0.0
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.0
+0.1
-0.1
+0.4
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.0
+0.1
-0.1
-0.3
+0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
+0.3
-0.3
+0.3
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.1
+0.4
+0.1
+0.2
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+0.0
+0.2
+0.0
+0.5
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.0
+0.5
+0.1
-0.3
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.0
+0.1
+0.2
-0.2
+0.4
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.5
+0.2
-0.2
+0.3
+0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.1
+0.1
+0.3
+0.2
-0.2
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RPSI07_RS23080
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