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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS23050 and RPSI07_RS23055 are separated by 58 nucleotides
RPSI07_RS23055 and RPSI07_RS23060 are separated by 151 nucleotides
RPSI07_RS23060 and RPSI07_RS23065 are separated by 33 nucleotides
RPSI07_RS23065 and RPSI07_RS23070 are separated by 103 nucleotides
RPSI07_RS23050: RPSI07_RS23050 - sigma 54-dependent transcriptional regulator, at 3,318,083 to 3,319,690
_RS23050
RPSI07_RS23055: RPSI07_RS23055 - patatin-like phospholipase, at 3,319,749 to 3,320,660
_RS23055
RPSI07_RS23060: RPSI07_RS23060 - cupin domain-containing protein, at 3,320,812 to 3,321,282
_RS23060
RPSI07_RS23065: RPSI07_RS23065 - acylphosphatase, at 3,321,316 to 3,321,690
_RS23065
RPSI07_RS23070: RPSI07_RS23070 - DUF4430 domain-containing protein, at 3,321,794 to 3,322,237
_RS23070
Group
Condition
RPSI07
_RS23050
RPSI07
_RS23055
RPSI07
_RS23060
RPSI07
_RS23065
RPSI07
_RS23070
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.1
-0.9
+0.0
-1.6
+0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.1
+0.1
+0.4
-2.8
+0.3
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.1
-0.1
+0.8
-2.6
+0.2
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-1.0
+0.1
+0.2
-1.2
+0.3
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.2
+0.0
+0.0
-1.7
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.3
+0.4
+0.4
-1.7
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.3
+0.5
-0.1
-1.5
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
-0.2
-0.6
-1.0
+0.1
m63_quarter_strength
M63_quarter_strength
-0.2
+0.1
+0.4
-1.6
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.0
-0.6
+0.8
-1.7
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
+0.9
-0.4
-2.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix
-0.3
+0.6
-0.1
-1.2
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.2
+0.1
+0.4
-1.4
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.2
+2.0
-0.1
-3.7
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.5
+0.6
+0.1
-1.2
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
+0.8
-0.4
-1.5
+0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.3
+0.5
-0.5
-1.0
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.3
+0.6
+0.0
-1.0
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.3
+0.8
-0.2
-0.9
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.3
+1.1
-0.1
-1.4
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
+0.4
+0.1
+0.5
-1.7
+0.1
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.6
+0.3
-0.1
-0.9
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
+2.0
-0.3
-1.9
+0.3
cpg
CPG
+0.5
+0.6
-0.1
-1.0
+0.2
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.5
+0.6
+0.3
-1.0
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.1
-0.5
-0.4
+1.3
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.4
+0.6
+0.6
-0.7
-0.4
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.6
+0.5
+0.1
-0.6
+0.2
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+1.2
+0.9
+0.1
-0.2
-0.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
+0.5
+0.7
+0.1
+0.6
-0.3
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