Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS21615 and RPSI07_RS21620 are separated by 359 nucleotidesRPSI07_RS21620 and RPSI07_RS21625 overlap by 4 nucleotidesRPSI07_RS21625 and RPSI07_RS21630 are separated by 36 nucleotidesRPSI07_RS21630 and RPSI07_RS21635 are separated by 298 nucleotides RPSI07_RS21615: RPSI07_RS21615 - OsmC family protein, at 3,008,687 to 3,009,133 _RS21615 RPSI07_RS21620: RPSI07_RS21620 - DUF3025 domain-containing protein, at 3,009,493 to 3,010,314 _RS21620 RPSI07_RS21625: RPSI07_RS21625 - dihydroorotase, at 3,010,311 to 3,011,345 _RS21625 RPSI07_RS21630: RPSI07_RS21630 - glycerate kinase, at 3,011,382 to 3,012,680 _RS21630 RPSI07_RS21635: RPSI07_RS21635 - class II glutamine amidotransferase, at 3,012,979 to 3,013,809 _RS21635
Group Condition RPSI07_RS21615 RPSI07_RS21620 RPSI07_RS21625 RPSI07_RS21630 RPSI07_RS21635
m63_quarter_strength M63_quarter_strength -0.6 -0.6 N.D. -1.5 -0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.8 -1.1 N.D. +0.2 -0.5
m63_quarter_strength M63_quarter_strength -1.1 -0.2 N.D. -1.2 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.7 -0.4 N.D. -0.3 -0.1
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -1.2 +0.1 N.D. -0.3 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -1.4 -0.2 N.D. -0.6 +0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.1 -0.0 N.D. -0.7 -0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.4 -0.6 N.D. -0.1 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet -0.6 -0.1 N.D. -0.2 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.3 -0.1 N.D. -0.4 -0.2
smsa no antibiotic control SMSA no antibiotic control -0.9 -0.1 N.D. -0.2 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.5 -0.1 N.D. +0.3 -0.7
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -1.3 +0.3 N.D. +0.1 -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -1.3 +0.1 N.D. -0.2 +0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 -0.1 N.D. -0.6 -0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.6 +0.2 N.D. +0.0 -0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.6 +0.2 N.D. +0.0 -0.3
m63_quarter_strength M63_quarter_strength +0.1 -0.2 N.D. -0.8 +0.3
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.4 +0.3 N.D. -0.3 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -1.5 +1.0 N.D. -0.4 +0.3
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.8 +0.0 N.D. +0.1 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.6 -0.1 N.D. +0.1 +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -0.6 +0.8 N.D. -0.2 -0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.5 +0.1 N.D. -0.2 +0.5
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 +0.6 N.D. -0.5 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.5 +0.6 N.D. -0.1 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.3 +0.1 N.D. -0.3 +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet -0.6 +0.1 N.D. -0.3 +1.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet -0.2 +0.7 N.D. -0.3 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol +0.8 +1.3 N.D. +0.1 +0.7
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