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Protein
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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS21615 and RPSI07_RS21620 are separated by 359 nucleotides
RPSI07_RS21620 and RPSI07_RS21625 overlap by 4 nucleotides
RPSI07_RS21625 and RPSI07_RS21630 are separated by 36 nucleotides
RPSI07_RS21630 and RPSI07_RS21635 are separated by 298 nucleotides
RPSI07_RS21615: RPSI07_RS21615 - OsmC family protein, at 3,008,687 to 3,009,133
_RS21615
RPSI07_RS21620: RPSI07_RS21620 - DUF3025 domain-containing protein, at 3,009,493 to 3,010,314
_RS21620
RPSI07_RS21625: RPSI07_RS21625 - dihydroorotase, at 3,010,311 to 3,011,345
_RS21625
RPSI07_RS21630: RPSI07_RS21630 - glycerate kinase, at 3,011,382 to 3,012,680
_RS21630
RPSI07_RS21635: RPSI07_RS21635 - class II glutamine amidotransferase, at 3,012,979 to 3,013,809
_RS21635
Group
Condition
RPSI07
_RS21615
RPSI07
_RS21620
RPSI07
_RS21625
RPSI07
_RS21630
RPSI07
_RS21635
m63_quarter_strength
M63_quarter_strength
-0.6
-0.6
N.D.
-1.5
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.8
-1.1
N.D.
+0.2
-0.5
m63_quarter_strength
M63_quarter_strength
-1.1
-0.2
N.D.
-1.2
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.7
-0.4
N.D.
-0.3
-0.1
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-1.2
+0.1
N.D.
-0.3
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-1.4
-0.2
N.D.
-0.6
+0.8
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
-0.0
N.D.
-0.7
-0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.4
-0.6
N.D.
-0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.6
-0.1
N.D.
-0.2
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
-0.1
N.D.
-0.4
-0.2
smsa no antibiotic control
SMSA no antibiotic control
-0.9
-0.1
N.D.
-0.2
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
-0.1
N.D.
+0.3
-0.7
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-1.3
+0.3
N.D.
+0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-1.3
+0.1
N.D.
-0.2
+0.5
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.2
-0.1
N.D.
-0.6
-0.3
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.6
+0.2
N.D.
+0.0
-0.3
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
-0.6
+0.2
N.D.
+0.0
-0.3
m63_quarter_strength
M63_quarter_strength
+0.1
-0.2
N.D.
-0.8
+0.3
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
-0.4
+0.3
N.D.
-0.3
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-1.5
+1.0
N.D.
-0.4
+0.3
xylem sap
Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap
-0.8
+0.0
N.D.
+0.1
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.6
-0.1
N.D.
+0.1
+0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
-0.6
+0.8
N.D.
-0.2
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.5
+0.1
N.D.
-0.2
+0.5
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.1
+0.6
N.D.
-0.5
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.5
+0.6
N.D.
-0.1
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.3
+0.1
N.D.
-0.3
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.6
+0.1
N.D.
-0.3
+1.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.2
+0.7
N.D.
-0.3
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.8
+1.3
N.D.
+0.1
+0.7
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