Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS21520 and RPSI07_RS21525 overlap by 4 nucleotidesRPSI07_RS21525 and RPSI07_RS21530 are separated by 90 nucleotidesRPSI07_RS21530 and RPSI07_RS21535 are separated by 80 nucleotidesRPSI07_RS21535 and RPSI07_RS21540 are separated by 315 nucleotides RPSI07_RS21520: RPSI07_RS21520 - tRNA dihydrouridine synthase DusB, at 2,991,381 to 2,992,451 _RS21520 RPSI07_RS21525: RPSI07_RS21525 - Fis family transcriptional regulator, at 2,992,448 to 2,992,681 _RS21525 RPSI07_RS21530: RPSI07_RS21530 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH, at 2,992,772 to 2,994,346 _RS21530 RPSI07_RS21535: RPSI07_RS21535 - crossover junction endodeoxyribonuclease RuvC, at 2,994,427 to 2,994,972 _RS21535 RPSI07_RS21540: RPSI07_RS21540 - hypothetical protein, at 2,995,288 to 2,996,730 _RS21540
Group Condition RPSI07_RS21520 RPSI07_RS21525 RPSI07_RS21530 RPSI07_RS21535 RPSI07_RS21540
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days -0.6 N.D. N.D. N.D. -0.0
smsa no antibiotic control SMSA no antibiotic control -0.5 N.D. N.D. N.D. -0.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days -0.4 N.D. N.D. N.D. -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.5 N.D. N.D. N.D. +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -0.3 N.D. N.D. N.D. -0.0
cpg CPG -0.5 N.D. N.D. N.D. +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.2 N.D. N.D. N.D. +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin -0.3 N.D. N.D. N.D. +0.2
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.2 N.D. N.D. N.D. +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.4 N.D. N.D. N.D. +0.4
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.2 N.D. N.D. N.D. -0.2
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.2 N.D. N.D. N.D. +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.2 N.D. N.D. N.D. +0.4
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap +0.3 N.D. N.D. N.D. -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.4 N.D. N.D. N.D. -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.0 N.D. N.D. N.D. +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.2 N.D. N.D. N.D. +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 N.D. N.D. N.D. +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 N.D. N.D. N.D. +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin +0.5 N.D. N.D. N.D. -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.2 N.D. N.D. N.D. +0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.3 N.D. N.D. N.D. +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 N.D. N.D. N.D. -0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.5 N.D. N.D. N.D. +0.0
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet +0.7 N.D. N.D. N.D. -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.5 N.D. N.D. N.D. +0.2
smsa no antibiotic control SMSA no antibiotic control +0.8 N.D. N.D. N.D. -0.1
stress SMSA with Ralstonia_antibiotic_mix +0.8 N.D. N.D. N.D. +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.7 N.D. N.D. N.D. +0.4
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.7 N.D. N.D. N.D. +0.3
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RPSI07_RS21520
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RPSI07_RS21525
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RPSI07_RS21540
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