Fitness for 5 genes in Ralstonia solanacearum PSI07

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500 ntRPSI07_RS21495 and RPSI07_RS21500 overlap by 4 nucleotidesRPSI07_RS21500 and RPSI07_RS21505 are separated by 211 nucleotidesRPSI07_RS21505 and RPSI07_RS21510 overlap by 4 nucleotidesRPSI07_RS21510 and RPSI07_RS21515 are separated by 16 nucleotides RPSI07_RS21495: RPSI07_RS21495 - nucleotidyltransferase family protein, at 2,984,232 to 2,984,957 _RS21495 RPSI07_RS21500: RPSI07_RS21500 - bifunctional diguanylate cyclase/phosphodiesterase, at 2,984,954 to 2,987,059 _RS21500 RPSI07_RS21505: RPSI07_RS21505 - Xaa-Pro aminopeptidase, at 2,987,271 to 2,988,647 _RS21505 RPSI07_RS21510: RPSI07_RS21510 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 2,988,644 to 2,989,879 _RS21510 RPSI07_RS21515: RPSI07_RS21515 - FAD-dependent oxidoreductase, at 2,989,896 to 2,991,167 _RS21515
Group Condition RPSI07_RS21495 RPSI07_RS21500 RPSI07_RS21505 RPSI07_RS21510 RPSI07_RS21515
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -4.4 -0.0 N.D. N.D. -0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -4.5 +0.0 N.D. N.D. +0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -2.8 -0.2 N.D. N.D. +0.4
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -2.2 +0.0 N.D. N.D. -0.1
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -1.6 -0.1 N.D. N.D. -0.3
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -1.8 +0.0 N.D. N.D. -0.0
m63_quarter_strength M63_quarter_strength -0.8 -0.0 N.D. N.D. -0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.1 -0.3 N.D. N.D. -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -1.0 -0.2 N.D. N.D. -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -1.3 +0.1 N.D. N.D. -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.3 -0.1 N.D. N.D. -0.0
stress SMSA with Ralstonia_antibiotic_mix -0.9 -0.1 N.D. N.D. -0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin -1.1 +0.0 N.D. N.D. -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -1.2 -0.2 N.D. N.D. +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -1.0 +0.2 N.D. N.D. -0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin -1.0 -0.0 N.D. N.D. -0.2
m63_quarter_strength M63_quarter_strength -0.7 +0.0 N.D. N.D. -0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet -0.7 +0.0 N.D. N.D. -0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.9 -0.1 N.D. N.D. -0.1
cpg no stress control CPG no stress control -0.9 +0.1 N.D. N.D. -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -1.1 +0.1 N.D. N.D. +0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.9 -0.2 N.D. N.D. +0.4
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days -0.6 -0.2 N.D. N.D. +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.7 -0.0 N.D. N.D. +0.2
xylem sap Plant=Tomato_MoneyMaker; PlantTreatment=exvivo_xylem_sap_from_healthy_plant; Sample=xylem_sap; Collection=25hr_after_growth_in_xylem_sap -0.8 +0.2 N.D. N.D. +0.3
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.8 +0.3 N.D. N.D. +0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.7 +0.1 N.D. N.D. +0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.6 +0.2 N.D. N.D. +0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days -0.5 -0.1 N.D. N.D. +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.9 +0.1 N.D. N.D. +0.5
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RPSI07_RS21495
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RPSI07_RS21500
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RPSI07_RS21510
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RPSI07_RS21515
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