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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS21360 and RPSI07_RS21365 are separated by 200 nucleotides
RPSI07_RS21365 and RPSI07_RS21370 are separated by 117 nucleotides
RPSI07_RS21370 and RPSI07_RS21375 are separated by 90 nucleotides
RPSI07_RS21375 and RPSI07_RS21380 are separated by 63 nucleotides
RPSI07_RS21360: RPSI07_RS21360 - DUF1571 domain-containing protein, at 2,957,209 to 2,958,111
_RS21360
RPSI07_RS21365: RPSI07_RS21365 - OmpW family protein, at 2,958,312 to 2,959,217
_RS21365
RPSI07_RS21370: RPSI07_RS21370 - NAD(P)/FAD-dependent oxidoreductase, at 2,959,335 to 2,960,336
_RS21370
RPSI07_RS21375: RPSI07_RS21375 - hypothetical protein, at 2,960,427 to 2,960,783
_RS21375
RPSI07_RS21380: RPSI07_RS21380 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 2,960,847 to 2,962,199
_RS21380
Group
Condition
RPSI07
_RS21360
RPSI07
_RS21365
RPSI07
_RS21370
RPSI07
_RS21375
RPSI07
_RS21380
cpg
CPG
-0.3
-0.3
-1.1
N.D.
-0.5
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.3
-0.2
-1.2
N.D.
-0.4
cpg
CPG
-0.7
-0.2
-0.4
N.D.
-0.2
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.3
-0.1
-0.6
N.D.
-0.1
m63_quarter_strength
M63_quarter_strength
-0.2
-0.3
-0.8
N.D.
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
+0.1
-0.4
N.D.
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.1
+0.1
-0.6
N.D.
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.2
-0.1
-1.0
N.D.
+0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.3
-0.1
+0.3
N.D.
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.1
-0.2
-0.7
N.D.
+0.4
m63_quarter_strength
M63_quarter_strength
-0.1
+0.0
-0.4
N.D.
+0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
-0.0
-0.1
+0.6
N.D.
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.4
-0.3
+0.7
N.D.
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
-0.2
+0.7
N.D.
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.1
-0.2
+0.7
N.D.
-0.2
stress
SMSA with Ralstonia_antibiotic_mix
-0.2
-0.2
+0.9
N.D.
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.6
-0.1
-0.7
N.D.
+0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.3
-0.2
+0.6
N.D.
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.1
-0.4
+0.9
N.D.
-0.2
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.2
+0.2
-0.3
N.D.
+0.4
smsa no antibiotic control
SMSA no antibiotic control
+0.2
-0.1
+0.7
N.D.
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.4
-0.0
+1.0
N.D.
+0.2
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.4
+0.1
+0.5
N.D.
+0.1
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.0
+0.0
+0.9
N.D.
+0.2
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
+0.1
+0.7
N.D.
+0.1
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.1
+0.5
+0.3
N.D.
+0.4
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
+0.3
+1.0
N.D.
+0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.2
+0.1
+1.5
N.D.
-0.3
m63_quarter_strength
M63_quarter_strength
+0.8
-0.3
+1.0
N.D.
+0.3
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
+0.1
+0.8
N.D.
+0.6
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