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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS21260 and RPSI07_RS21265 are separated by 276 nucleotides
RPSI07_RS21265 and RPSI07_RS21270 overlap by 8 nucleotides
RPSI07_RS21270 and RPSI07_RS21275 overlap by 4 nucleotides
RPSI07_RS21275 and RPSI07_RS21280 are separated by 208 nucleotides
RPSI07_RS21260: RPSI07_RS21260 - recombinase RecA, at 2,932,886 to 2,933,944
_RS21260
RPSI07_RS21265: RPSI07_RS21265 - DNA-binding response regulator, at 2,934,221 to 2,934,919
_RS21265
RPSI07_RS21270: RPSI07_RS21270 - sensor histidine kinase, at 2,934,912 to 2,936,450
_RS21270
RPSI07_RS21275: RPSI07_RS21275 - DUF4212 domain-containing protein, at 2,936,447 to 2,936,764
_RS21275
RPSI07_RS21280: RPSI07_RS21280 - MFS transporter, at 2,936,973 to 2,938,676
_RS21280
Group
Condition
RPSI07
_RS21260
RPSI07
_RS21265
RPSI07
_RS21270
RPSI07
_RS21275
RPSI07
_RS21280
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-2.1
-0.3
-0.0
+0.0
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-2.1
-0.1
+0.1
-0.3
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-2.6
+0.1
+0.2
-0.1
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-2.3
-0.0
-0.0
-0.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-1.4
-0.3
-0.2
-0.1
-0.3
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-2.3
-0.1
+0.1
+0.0
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-1.8
-0.0
-0.0
-0.2
-0.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-1.7
-0.2
-0.0
-0.3
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-2.1
+0.3
-0.0
-0.2
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-1.6
-0.8
+0.3
+0.2
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-2.4
+0.2
+0.5
-0.2
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-2.3
+0.4
+0.3
-0.4
+0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-1.5
-0.8
+0.2
+0.3
-0.0
stress
SMSA with Ralstonia_antibiotic_mix
-2.1
+0.3
+0.1
-0.3
+0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-2.1
+0.5
+0.1
-0.2
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-2.4
+0.4
+0.2
+0.3
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-1.9
-0.0
-0.0
+0.2
-0.0
stress
SMSA with Ralstonia_antibiotic_mix
-1.8
+0.1
+0.0
+0.1
+0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-1.9
+0.2
-0.0
+0.2
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-1.8
-0.0
+0.1
+0.4
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-1.9
+0.4
+0.3
-0.4
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-2.3
+0.8
+0.2
-0.0
+0.0
cpg no stress control
CPG no stress control
-1.8
+0.3
+0.3
+0.1
-0.0
smsa no antibiotic control
SMSA no antibiotic control
-1.5
+0.2
+0.2
-0.1
+0.0
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-1.5
+0.2
+0.2
+0.1
+0.0
m63_quarter_strength
M63_quarter_strength
-1.2
+0.5
-0.1
+0.0
-0.2
m63_quarter_strength
M63_quarter_strength
-1.3
-0.2
-0.1
+0.6
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-1.4
+0.5
+0.0
+0.2
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-1.1
-0.3
-0.1
+0.9
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+1.5
-0.2
+0.1
+0.7
-0.2
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