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Protein
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Fitness for 5 genes in
Ralstonia solanacearum PSI07
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RPSI07_RS21195 and RPSI07_RS21200 overlap by 8 nucleotides
RPSI07_RS21200 and RPSI07_RS21205 are separated by 18 nucleotides
RPSI07_RS21205 and RPSI07_RS21210 are separated by 94 nucleotides
RPSI07_RS21210 and RPSI07_RS25230 are separated by 162 nucleotides
RPSI07_RS21195: RPSI07_RS21195 - alpha/beta hydrolase, at 2,919,805 to 2,920,920
_RS21195
RPSI07_RS21200: RPSI07_RS21200 - DUF2946 domain-containing protein, at 2,920,913 to 2,921,500
_RS21200
RPSI07_RS21205: RPSI07_RS21205 - peptidase M48, at 2,921,519 to 2,923,207
_RS21205
RPSI07_RS21210: RPSI07_RS21210 - cyclic pyranopterin monophosphate synthase MoaC, at 2,923,302 to 2,923,778
_RS21210
RPSI07_RS25230: RPSI07_RS25230 - hypothetical protein, at 2,923,941 to 2,924,171
_RS25230
Group
Condition
RPSI07
_RS21195
RPSI07
_RS21200
RPSI07
_RS21205
RPSI07
_RS21210
RPSI07
_RS25230
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.3
-0.9
+0.2
-0.4
-1.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.8
-1.5
+0.1
-0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.2
-0.5
-0.3
-0.3
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
-0.5
-0.4
-0.3
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.1
-0.2
-0.3
-0.4
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.3
-0.2
-0.2
-0.6
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.2
-0.4
+0.3
-0.3
-0.1
m63_quarter_strength
M63_quarter_strength
+0.1
-0.3
-0.5
+0.5
-0.3
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.2
-0.2
+0.2
-0.4
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.5
+0.3
-0.2
-0.9
+0.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.3
-0.5
-0.2
+0.0
-0.2
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.6
+0.3
-0.5
-0.4
-0.2
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.2
-0.3
+0.3
-0.4
+0.1
in planta
Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
+0.1
-0.1
-0.5
+0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-0.3
-0.3
-0.1
+0.0
+0.6
cpg
CPG
+0.1
+0.5
-0.1
-0.4
-0.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
+0.0
-0.3
-0.6
+1.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.1
+0.0
-0.2
-0.4
+0.8
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
+0.0
+1.0
-0.0
-0.1
-0.3
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
+0.3
+0.4
+0.2
-0.2
-0.2
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.3
+0.8
+0.0
-0.3
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.2
+1.3
-0.2
+0.2
-0.5
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.4
+0.4
+0.2
-0.0
-0.2
cpg no stress control
CPG no stress control
+0.2
+0.6
+0.3
-0.0
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.1
+0.4
+0.3
+0.2
-0.1
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
+0.3
+0.6
-0.4
-0.4
+0.9
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.0
+0.9
+0.2
-0.2
-0.0
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days
+0.2
+0.8
+0.3
-0.2
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.1
+0.9
-0.1
+0.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.1
+1.0
+0.1
+0.1
+0.1
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